Yes you get the motor mounts bolted up... Hopefully you actually bolted them to the engine because that's damn dangerous if you have the block just sitting free on them. If its the one big nut that holds them to the K that isn't as big a deal.
Make sure you used the plastic clutch alignment tool and make sure that when you installed the clutch you constantly checked it, that plastic tool should be able to slide in and out all the way with 0 binding at all. If it binds up or is really hard to push in or pull out, you need to redo the clutch install. Make sure all the clutch bolts are correctly torqued too, don't just use a calibrated wrist.
As far as getting it to go in... get the motor tilted as far back as it'll go and get that sucker in there. Make a super long extension with like 4 or 5 extensions and a universal on the end and have a friend tighten up those top bolts at the end of it with a ratchet while you hold the socket on the bolt, but definitely install the side bolts first to secure it before doing that. The integrated bell makes it a pain but not terrible. Its gonna be like 15 minutes of 4 letter words if you do it right, once you get under there and start trying to get it into place. If it was a 95-down car its retarded easy since the bell goes on first and the T5 is like 75lbs so you can install that by yourself on your back.
Honestly if I didn't have lift access I'd pull the engine and trans out as one piece before attempting to do it on my back on stands with a sloped driverway... that's just... no...